







Research relies on software. Software written by scientists, for science, runs through the entire modern research stack: NumPy and SciPy, R and ggplot2, Jupyter, BLAST, ImageJ, AlphaFold. Yet in the scholarly record, that software is nearly invisible. Software is not usually cited formally in publications and is usually just mentioned in the text, which means […]
Science is open software
TL;DR I claim that modern science is synonymous with open source software. This post explains why, why it matters, and what you can (and should) do next. Why do you care about (open source) software? - Everyone I spend a lot of my time working on software. I have been asked why software matters more times than I can remember. Software is, people say, not science. It’s a time sink, something to rush past in the pursuit of what really matters: results (and papers if you’re in academia).
Welcome to the Tidyverse
Wickham et al., (2019). Welcome to the Tidyverse. Journal of Open Source Software, 4(43), 1686, https://doi.org/10.21105/joss.01686

Doing Data Science on the Shoulders of Giants: The Value of Open Source Software for the Data Science Community
Open source software is ubiquitous throughout data science, and enables the work of nearly every data scientist in some way or another. Open source projects, however, are disproportionately maintained by a small number of individuals, some of whom are institutionally supported, but many of whom do this maintenance on a purely volunteer basis. The health of the data science ecosystem depends on the support of open source projects, on an individual and institutional level.

Doing Data Science on the Shoulders of Giants: The Value of Open Source Software for the Data Science Community · Issue 2.2, Spring 2020
Open source software is ubiquitous throughout data science, and enables the work of nearly every data scientist in some way or another. Open source projects, however, are disproportionately maintained by a small number of individuals, some of whom are institutionally supported, but many of whom do this maintenance on a purely volunteer basis. The health of the data science ecosystem depends on the support of open source projects, on an individual and institutional level.

How open-source software took over the world | TechCrunch
It was just five years ago that there was an ample dose of skepticism from investors about the viability of open source as a business model. Fast-forward to today and we’ve witnessed the growing excitement in the space.

Open Source
These GitHub repositories contain open-source software developed by the Observatory on Social Media for various projects

Open Source and Free Software Considered Harmful — marisa's "blog"
(It's best to read this blog post after reading Steve Klabnik's The culture war at the heart of open source and What comes after “open so...

SciPy 1.0: fundamental algorithms for scientific computing in Python
SciPy is an open-source scientific computing library for the Python programming language. Since its initial release in 2001, SciPy has become a de facto standard for leveraging scientific algorithms in Python, with over 600 unique code contributors, thousands of dependent packages, over 100,000 dependent repositories and millions of downloads per year. In this work, we provide an overview of the capabilities and development practices of SciPy 1.0 and highlight some recent technical developments.

How open source projects need to adapt to the AI coding era | We Love Open Source • All Things Open
A new Carnegie Mellon study shows AI coding tools boost velocity by 281% — then leave codebases harder to work with. Here's what open source communities need to do before the sugar rush wears off.

Cory Doctorow: IP
You’ve probably heard of “open source software.” If you pay attention to the politics of this stuff, you might have heard of “free software” and even know a little ab…

Chapter 1. Introduction
Free software — open source software[3] — has become the backbone of modern information technology. It runs on your phone, on your laptop and desktop computers, and in embedded microcontrollers for household appliances, automobiles, industrial machinery and countless other devices that we too often forget even have software. Open source is especially prevalent on the servers that provide online services on the Internet. Every time you send an email, visit a web site, or call up some information on your smartphone, a significant portion of the activity is handled by open source software.
Embrace Open Source, For the Good of Nerdmanity | Fortune
More businesses are willing to use open source software for key projects.

You use more open source software than you think
Open source packages are the “roads and bridges” of software, but unlike real roads and bridges, open source is often invisible.

The Money In Open-Source Software | TechCrunch
It’s no secret that open-source technology -- once the province of radicals, hippies and granola eaters -- has gone mainstream. According to industry estimates, more than 180 young companies that give away their software raised roughly $3.2 billion in financing from 2011 to 2014. Despite the growing popularity of open-source software, though, many open-source companies are not financially healthy.

relevant_tools.csv · darkshapes/relevant_tools at main
We’re on a journey to advance and democratize artificial intelligence through open source and open science.
Anna’s Archive: LibGen (Library Genesis), Sci-Hub, Z-Library in one place - Anna’s Archive
The world’s largest open-source open-data library. Mirrors Sci-Hub, Library Genesis, Z-Library, and more.