How the microbiologist Carl Woese fundamentally changed the way we think about evolution and the origins of life.
How Life Works: A User’s Guide to the New Biology
“Bold and intriguing.”—Wall Street Journal • “Penetrating. . . . Provocative and profound.”—Publishers Weekly (starred review) • “Offers plenty of food for thought.”—Kirkus Reviews (starred review) “Ball’s marvelous book is both wide-ranging and deep. . . . I could not put it down.”—Siddhartha Mukherjee, author of The Song of the Cell and the Pulitzer Prize–winning The Emperor of All Maladies A new, cutting-edge vision of biology that revises our understanding of what life itself is, how to enhance it, and what possibilities it offers. Biology is undergoing a quiet but profound transformation. Several aspects of the standard picture of how life works—the idea of the genome as a blueprint, of genes as instructions for building an organism, of proteins as precisely tailored molecular machines, of cells as entities with fixed identities, and more—have been exposed as incomplete, misleading, or wrong. In How Life Works, Philip Ball explores the new biology, revealing life to be a far richer, more ingenious affair than we had guessed. Ball explains that there is no unique place to look for an answer to this question: life is a system of many levels—genes, proteins, cells, tissues, and body modules such as the immune system and the nervous system—each with its own rules and principles. How Life Works explains how these levels operate, interface, and work together (most of the time). With this knowledge come new possibilities. Today we can redesign and reconfigure living systems, tissues, and organisms. We can reprogram cells, for instance, to carry out new tasks and grow into structures not seen in the natural world. As we discover the conditions that dictate the forms into which cells organize themselves, our ability to guide and select the outcomes becomes ever more extraordinary. Some researchers believe that ultimately we will be able to regenerate limbs and organs, and perhaps even create new life forms that evolution has never imagined. Incorporating the latest research and insights, How Life Works is a sweeping journey into this new frontier of the life sciences, a realm that will reshape our understanding of life as we know it.
Darwin the abolitionist
The theory of evolution is regarded as a triumph of disinterested scientific reason. Yet, on the 150th anniversary of "On the Origin of Species," new research reveals that Darwin was driven to the idea of common descent by a great moral cause
Richard McElreath 🐈⬛ (@rmcelreath.bsky.social)
Anthropologist - Bayesian modeling - science reform - cat and cooking content too - Director @ MPI for evolutionary anthropology https://www.eva.mpg.de/ecology/staff/richard-mcelreath/
Synthetic philosophy
In this essay, I discuss Dennett’s From Bacteria to Bach and Back: The Evolution of Minds (hereafter From Bacteria) and Godfrey Smith’s Other Minds: The Octopus and The Evolution of Intelligent Life (hereafter Other Minds) from a methodological perspective. I show that these both instantiate what I call ‘synthetic philosophy.’ They are both Darwinian philosophers of science who draw on each other’s work (with considerable mutual admiration). In what follows I first elaborate on synthetic philosophy in light of From Bacteria and Other Minds; I also explain my reasons for introducing the term; and I close by looking at the function of Darwinism in contemporary synthetic philosophy.
Fantastically Wrong: What Darwin Really Screwed Up About Evolution
It’s hard to overstate just how brilliant and huge an idea Charles Darwin’s theory of evolution by natural selection was and continues to be. It absolutely rocked Victorian England, to the extent that stuffy old Victorian England could be rocked past people just barely raising their voices in polite protest. But some folks, particularly highly \[…\]
The cognitive cell: bacterial behavior reconsidered
Research on how bacteria adapt to changing environments underlies the contemporary biological understanding of signal transduction, and signal transduction provides the foundation of the information-processing approach that is the hallmark of the ‘cognitive revolution,’ which began in the mid-20th century. Yet cognitive scientists largely remain oblivious to research into microbial behavior that might provide insights into problems in their own domains, while microbiologists seem equally unaware of the potential importance of their work to understanding cognitive capacities in multicellular organisms, including vertebrates. Evidence in bacteria for capacities encompassed by the concept of cognition is reviewed. Parallels exist not only at the heuristic level of functional analogue, but also at the level of molecular mechanism, evolution and ecology, which is where fruitful cross-fertilization among disciplines might be found.
JBS Haldane-A Dialectical Account of Evolution
THIS paper requires a preliminary apology. It is written in Spain, and as the writer is taking a very minor part in the defence of Madrid he is unable to consult many works of reference. Readers to whom practice is as important as theory will excuse any inadequacy in citations.
Holobiont
A holobiont is an assemblage of a host and the many other species living in or around it, which together form a discrete ecological unit through symbiosis, though there is controversy over this discreteness. The components of a holobiont are individual species or bionts, while the combined genome of all bionts is the hologenome. The holobiont concept was initially introduced by the German theoretical biologist Adolf Meyer-Abich in 1943, and then apparently independently by Dr. Lynn Margulis in her 1991 book Symbiosis as a Source of Evolutionary Innovation. The concept has evolved since the original formulations. Holobionts include the host, virome, microbiome, and any other organisms which contribute in some way to the functioning of the whole. Well-studied holobionts include reef-building corals and humans.
What Physical ‘Life Force’ Turns Biology’s Wheels? | Quanta Magazine
The bacterial flagellar motor is finally understood after 50 years. In its workings, columnist Natalie Wolchover finds the essence of life.
How DNA Editing Could Change Life on Earth
Researchers hope to use the powerful biological tool to alter the genetic destiny of species and eliminate diseases.
Guest post: If you’re going to critique science, be scientific about it
Loren K. Mell Editor’s note: This post responds to a Feb. 13 article in The Atlantic, “The Scientific Literature Can’t Save Us Now,” written by Retraction Watch cofounders Adam Marcus and Ivan Oran…
The Multiple Paths to Multiple Life
We argue for multiple forms of life realized through multiple different historical pathways. From this perspective, there have been multiple origins of life on Earth—life is not a universal homology. By broadening the class of originations, we significantly expand the data set for searching for life. Through a computational analogy, the origin of life describes both the origin of hardware (physical substrate) and software (evolved function). Like all information-processing systems, adaptive systems possess a nested hierarchy of levels, a level of function optimization (e.g., fitness maximization), a level of constraints (e.g., energy requirements), and a level of materials (e.g., DNA or RNA genome and cells). The functions essential to life are realized by different substrates with different efficiencies. The functional level allows us to identify multiple origins of life by searching for key principles of optimization in different material form, including the prebiotic origin of proto-cells, the emergence of culture, economic, and legal institutions, and the reproduction of software agents.
Design in The Age of Biology: Shifting From a Mechanical-Object Ethos to an Organic-Systems Ethos
In the early twentieth century, our understanding of physics changed rapidly; now, our understanding of biology is undergoing a similar rapid change.
The Philosophical Implications of the Second Scientific Revolution
Notes from my history of philosophy course lecture on Darwin, Maxwell, Einstein, and Bohr
A diverse and distinct microbiome inside living trees
Nature - Microbiome analyses of living trees show that a single tree can host approximately one trillion bacteria, with microbial communities distinctly partitioned between heartwood and sapwood...
