







A tool and ecosystem for collaborative knowledge synthesis
Getting started - Docs
Discourse Graphs are a tool and ecosystem for collaborative knowledge synthesis, enabling researchers to map ideas and arguments in a modular, composable graph format.
Toward Automated Discourse Network Analysis
Discourse Network Analysis has long been capped by the price of expert judgment. Here is a design for automating it at corpus scale without surrendering command of meaning — and FineStructure, the open-source workbench I am building for it.

Steps Towards an Infrastructure for Scholarly Synthesis
Sharing, reusing, and synthesizing knowledge is central to the research process, both individually, and with others. These core functions are not supported by our formal scholarly publishing infrastructure: instead of the smooth functioning of functional infrastructure, researchers resort to laborious ”hacks” and workarounds to ”mine” publications for what they need, and struggle to efficiently share the resulting information with others. Information scientists have proposed an alternative infrastructure based on the more appropriately granular model of a discourse graph of claims, and evidence, along with key rhetorical relationships between them. However, despite significant technical progress on standards and platforms, the predominant infrastructure remains steadfastly document-based. Drawing from infrastructure studies, we locate the current infrastructural bottlenecks in the lack of local systems that integrate discourse-centric models to augment synthesis work, from which an infrastructure for synthesis can be grown. Through 3 years of research through design and field deployment in a distributed community of hypertext notebook users, we elaborate a design vision of what can and should be built in order to grow a discourse-centric synthesis infrastructure: a thriving “installed base” of researchers authoring local, shareable discourse graphs to improve synthesis work, enhance primary research and research training, and augment collaborative research. We discuss how this design vision — and our empirical work — contributes steps towards a new infrastructure for synthesis, and increases HCI’s capacity to advance collective intelligence and solve infrastructure-level problems.
Steps Towards an Infrastructure for Scholarly Synthesis
Sharing, reusing, and synthesizing knowledge is central to the research process, both individually, and with others. These core functions are not supported by our formal scholarly publishing infrastructure: instead of the smooth functioning of functional infrastructure, researchers resort to laborious "hacks" and workarounds to "mine" publications for what they need, and struggle to efficiently share the resulting information with others. Information scientists have proposed an alternative infrastructure based on the more appropriately granular model of a discourse graph of claims, and evidence, along with key rhetorical relationships between them. However, despite significant technical progress on standards and platforms, the predominant infrastructure remains steadfastly document-based. Drawing from infrastructure studies, we locate the current infrastructural bottlenecks in the lack of local systems that integrate discourse-centric models to augment synthesis work, from which an infrastructure for synthesis can be grown. Through 3 years of research through design and field deployment in a distributed community of hypertext notebook users, we elaborate a design vision of what can and should be built in order to grow a discourse-centric synthesis infrastructure: a thriving "installed base" of researchers authoring local, shareable discourse graphs to improve synthesis work, enhance primary research and research training, and augment collaborative research. We discuss how this design vision -- and our empirical work -- contributes steps towards a new infrastructure for synthesis, and increases HCI's capacity to advance collective intelligence and solve infrastructure-level problems.

Open Sourcing Scientific Research with Lab Discourse Graphs
Metagov x Future of Science Seminar - Discourse Graphs with Matt Akamatsu
Discourse Graphs and the Future of Science | Protocol Labs Research
Interview between Tom Kalil, Chief Innovation Officer of Schmidt Futures, Dr. Evan Miyazono, Research Team Lead at Protocol Labs, and Dr. Matt Akamatsu, Assistant Professor of Biology at the University of Washington.


From Social Network to Sense Making
DevReal: Simple Knowledge Graphs with Outlines, neo4j, and Modal, Cameron Pfiffer
NLnet; Nanoarguments
Scientific knowledge is currently scattered across papers, repositories, and disconnected platforms, with no structured way to trace how claims connect to evidence or how arguments develop. Nanoarguments builds a framework and tools for creating, browsing, and contributing to a global, federated graph of scientific discourse and evidence. Researchers and their communities can collaboratively structure claims, evidence chains, and discussion as nanopublications, which are small, cryptographically signed Linked Data snippets with precise provenance and authorship, published to a decentralized peer-to-peer network. The project builds upon the Nanodash interface to help users browse, edit, and aggregate discourse and evidence graphs, and integrates with dokieli to enable in-context authoring of nanopublications as inline annotations while reading or writing a document. A bidirectional ActivityPub connector bridges the nanopublication network and the fediverse, allowing discourse threads to start as social exchanges and crystallize into persistent, machine-readable evidence records. The project will be piloted with early adopter research groups in discourse and evidence modeling. All components will be released as open-source modules that other systems can build upon.

MATSUlab-issue-exchange-analysis/output/evidence_bundles/evd5-issue-funnel at main · DiscourseGraphs/MATSUlab-issue-exchange-analysis
Metrics and evidence bundles from an analysis of the MATSUlab discourse graph: issue exchange, knowledge production, and researcher onboarding - DiscourseGraphs/MATSUlab-issue-exchange-analysis
KARMA: Leveraging Multi-Agent LLMs for Automated Knowledge Graph Enrichment
Maintaining comprehensive and up-to-date knowledge graphs (KGs) is critical for modern AI systems, but manual curation struggles to scale with the rapid growth of scientific literature. This paper presents KARMA, a novel framework employing multi-agent large language models (LLMs) to automate KG enrichment through structured analysis of unstructured text. Our approach employs nine collaborative agents, spanning entity discovery, relation extraction, schema alignment, and conflict resolution that iteratively parse documents, verify extracted knowledge, and integrate it into existing graph structures while adhering to domain-specific schema. Experiments on 1,200 PubMed articles from three different domains demonstrate the effectiveness of KARMA in knowledge graph enrichment, with the identification of up to 38,230 new entities while achieving 83.1% LLM-verified correctness and reducing conflict edges by 18.6% through multi-layer assessments.
'Generative CI' through Collective Response Systems
How can many people (who may disagree) come together to answer a question or make a decision? "Collective response systems" are a type of generative collective intelligence (CI) facilitation process meant to address this challenge. They enable a form of "generative voting", where both the votes, and the choices of what to vote on, are provided by the group. Such systems overcome the traditional limitations of polling, town halls, standard voting, referendums, etc. The generative CI outputs of collective response systems can also be chained together into iterative "collective dialogues", analogously to some kinds of generative AI. Technical advances across domains including recommender systems, language models, and human-computer interaction have led to the development of innovative and scalable collective response systems. For example, Polis has been used around the world to support policy-making at different levels of government, and Remesh has been used by the UN to understand the challenges and needs of ordinary people across war-torn countries. This paper aims to develop a shared language by defining the structure, processes, properties, and principles of such systems. Collective response systems allow non-confrontational exploration of divisive issues, help identify common ground, and elicit insights from those closest to the issues. As a result, they can help overcome gridlock around conflict and governance challenges, increase trust, and develop mandates. Continued progress toward their development and adoption could help revitalize democracies, reimagine corporate governance, transform conflict, and govern powerful AI systems -- both as a complement to deeper deliberative democratic processes and as an option where deeper processes are not applicable or possible.


Issue-based information system
Logial Thinking Process (LTP) / Issue Tree App and Exploration - Issue Trees & Logical Thinking Process
LinkedClaims — Decentralized Verifiable Claims on ATProto
Where Should Science Go Next
RRGI · Discourse Graph — lens switch
Issue Trees, Hypothesis Trees and SCQA - the Minto Pyramid Principles